Category
CNV
Usage
cnvnator -root file.root -genotype bin_size [-ngc]
Manual
Once prompted enter a genomic region, e.g.,
>12:11396601-11436500
or
>chr12:11396601-11436500
or
>12 11396601 11436500
or
>chr12 11396601 11436500
One can also perform instant visualization by adding the word 'view', e.g.,
>12:11396601-11436500 view
or
>chr12:11396601-11436500 view
or
>12 11396601 11436500 view
or
>chr12 11396601 11436500 view
For genotyping of multiple regions one can use input piping, e.g.,
./cnvnator -root NA12878.root -genotype 100 << EOF
12:11396601-11436500
22:20999401-21300400
exit
EOF
Share your experience or ask a question