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Software Parameter Function More
CNVnator cnvnator -root file.root [-chrom name1 ...] -call bin_size [-ngc] CNV CALLING Show
CNVnator cnvnator [-genome name]-root out.root [-chrom name ...] -merge file1.root ... Merging root files. Merging can be used when combining read mappings extracted from multiple files. Note, histogram generation, statistics calculation, signal partitioning, and CNV calling should be completed/redone after merging. Show
CNVnator cnvnator -root file.root [-chrom chr_name1 ...] -view bin_size [-ngc] Visualizing specified regions. Show
CNVnator cnvnator [-genome name] -root file.root [-chrom name1 ...] -his bin_size [-d dir] Generating a histogram by using CNVnator Show
CNVnator cnvnator -root file.root [-chrom name1 ...] -partition bin_size [-ngc] RD signal partitioning Show
CNVnator cnvnator -root file.root [-chrom name1 ...] -stat bin_size Calculating statistics for CNVnator. This step must be completed before proceeding to partitioning and CNV calling. Show
CNVnator cnvnator -root file.root -genotype bin_size [-ngc] Genotyping genomic regions Show