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Function: Download SRA, dbGaP, and ADSP data from NCBI
Usage: prefetch [options] <SRA accession>
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Function: Validate the integrity of downloaded SRA data
Usage: vdb-validate [options] <accession>
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Function: The non-interactive network downloader
Usage: wget [option]... [URL]...
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Function: Generate pileup statistics on aligned SRA data
Usage: sra-pileup [options] <path/file> [<path/file> ...]
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Function: Generate pileup statistics on aligned SRA data
Usage: sra-pileup [options] <accession>
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Function: Download SRA, dbGaP, and ADSP data from NCBI
Usage: prefetch [options] --list <kart_file>
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Function: Split a bed up into individual beds (one for each internal exon).
Usage: bedToExons originalBeds.bed splitBeds.bed
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Function: Convert SRA data into Illumina native formats (qseq, etc.)
Usage: illumina-dump [options] <accession>
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Function: Decrypt non-SRA dbGaP data ("phenotype data")
Usage: vdb-decrypt [options] <source-file> <destination-file>
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Function: Generate statistics about SRA data (quality distribution, etc.)
Usage: sra-stat [options] <path/file> [<path/file> ...]
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Function: This tool extracts reads from SRA archives.
Usage: fastq-dump [options] <path/file> [<path/file> ...]
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Function: Fetch wiggle data from UCSC Genome Browser's database or a wig file
Usage: hgWiggle [options] <track names ...>
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Function: Output the native VDB format of SRA data.
Usage: vdb-dump [options] <accession>
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Function: Encrypt non-SRA dbGaP data ("phenotype data")
Usage: vdb-encrypt [options] <source-file> <destination-file>
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Function: Convert SRA data into ABI format (csfasta / qual)
Usage: abi-dump [options] <accession>