Category

Mapping


Usage

bwa samse [-n maxOcc] <in.db.fasta> <in.sai> <in.fq> > <out.sam>


Manual

OPTIONS:

-n INT Maximum number of alignments to output in the XA tag for reads paired properly. If a read has more than INT hits, the XA tag will not be written. [3]

-r STR Specify the read group in a format like ‘@RG\tID:foo\tSM:bar’. [null]

Protocols using this tool

Identifying RNA editing sites using RNA sequencing data alone

Share your experience or ask a question