BigWig Manipulation

Function: Merge together multiple bigWigs into a single output bedGraph.
Usage: bigWigMerge [options] .. out.bedGraph
Supported input format: bigWig
Function: Averaging scores in a bigWig file for the regions/intervals given in a bed file
Usage: bigWigAverageOverBed [options] in.bed
Supported input format: BED, bigWig
Function: Convert ascii format wig file (in fixedStep, variableStepor bedGraph format) to binary bigwig format.
Usage: wigToBigWig in.wig chrom.sizes
Supported input format: WIG
Function: Correlate bigWig files, optionally only on target regions.
Usage: bigWigCorrelate [options] a.bigWig b.bigWig
Supported input format: bigWig
Function: Produce a table that correlates all pairs of wig or bigWig files
Usage: wigCorrelate [options] one.wig two.wig ... n.wig
Supported input format: bigWig, WIG
Function: Print out summary information about bigWig file. The summary statistics include mean, min, max, std, and bases covered.
Usage: bigWigInfo [options]
Supported input format: bigWig
Function: Extract binned summary information from a bigWig file for a genomic region
Usage: bigWigSummary [options] file.bigWig chrom start end dataPoints
Supported input format: bigWig
Function: Compute the average scores for each of the bigWig files in every genomic region.
Usage: multiBigwigSummary bins -b -out results.npz [options]
Supported input format: bigWig
wiggletools sum
Function: Merge bigWig files
Usage: wiggletools sum [bigwig files...]
Supported input format: bigWig,WIG
Function: Merge non-overlapping bigWig files directly into bigWig format
Usage: bigWigCat [options] ...
Supported input format: bigWig