Inference of differential exon usage in RNA-Seq.
DEXSeq(object, fullModel=design(object), reducedModel = ~ sample + exon, BPPARAM=MulticoreParam(workers=1), fitExpToVar="condition", quiet=TRUE )
object An DEXSeqDataSet object.
fullModel The full model formula
reducedModel Null model formula.
BPPARAM A "BiocParallelParam" instance. See ?bplapply for details.
fitExpToVar A variable name contained in the sample data. The expression values will be
fitted to this variable using the the formula " ~ sample + fitExpToVar * exon".
quiet Whether to print messages at each step