Category

Fetch Data


Usage

illumina-dump [options] <accession>


Manual

General:
-h | --help Displays ALL options, general usage, and version information.
-V | --version Display the version of the program.
Data formatting:
-A | --accession Replaces accession derived from in filename(s) and deflines.
-x | --qseq <1|2> Output QSEQ format: whole spot (1) or split by reads (2).
Filtering:
-N | --minSpotId Minimum spot id.
-X | --maxSpotId Maximum spot id.
-G | --spot-group Split into files by spot group ("read group").
Workflow and piping:
-O | --outdir Output directory, default is working directory ('.').
-Z | --stdout Output to stdout, all split data becomes joined into a single stream.
--gzip Compress output using gzip.
--bzip2 Compress output using bzip2.


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