Sam/Bam Manipulation


java -jar picard.jar BuildBamIndex I=input.bam


INPUT (String)    A BAM file or GA4GH URL to process. Must be sorted in coordinate order. Required.
OUTPUT (File)    The BAM index file. Defaults to x.bai if INPUT is x.bam, otherwise INPUT.bai. If INPUT is a URL and OUTPUT is unspecified, defaults to a file in the current directory. Default value: null.

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