java -jar picard.jar

Reference

Extract OxoG metrics from generalized artifacts metrics.

Category

Sam/Bam Manipulation

Usage

java -jar picard.jar ConvertSequencingArtifactToOxoG I=artifact_metricsR=reference.fasta

Manual

INPUT_BASE (File)    Basename of the input artifact metrics file (output by CollectSequencingArtifactMetrics) Required.
OUTPUT_BASE (File)    Basename for output OxoG metrics. Defaults to same basename as input metrics Default value: null.

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