Category

Sam/Bam Manipulation


Usage

java -jar picard.jar NormalizeFasta I=input_sequence.fasta O=normalized_sequence.fasta


Manual

INPUT (File)    The input FASTA file to normalize. Required.
OUTPUT (File)    The output FASTA file to write. Required.
LINE_LENGTH (Integer)    The line length to be used for the output FASTA file. Default value: 100. This option can be set to 'null' to clear the default value.
TRUNCATE_SEQUENCE_NAMES_AT_WHITESPACE (Boolean)    Truncate sequence names at first whitespace. Default value: false. This option can be set to 'null' to clear the default value. Possible values: {true, false}


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