Category

Sam/Bam Manipulation


Usage

java -jar picard.jar ReplaceSamHeader I=input_1.bam HEADER=input_2.bam O=bam_with_new_head.bam


Manual

INPUT (File)    SAM file from which SAMRecords will be read. Required.
HEADER (File)    SAM file from which SAMFileHeader will be read. Required.
OUTPUT (File)    SAMFileHeader from HEADER file will be written to this file, followed by SAMRecords from INPUT file Required.


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