java -jar picard.jar

Reference

Takes a VCF and a second file that contains a sequence dictionary and updates the VCF with the new sequence dictionary.

Category

Sam/Bam Manipulation

Usage

java -jar picard.jar UpdateVcfSequenceDictionary

Manual

INPUT (File)    Input VCF Required.
OUTPUT (File)    Output VCF to be written. Required.
SEQUENCE_DICTIONARY (File)    A Sequence Dictionary (can be read from one of the following file types (SAM, BAM, VCF, BCF, Interval List, Fasta, or Dict) Required.

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