Category

Sam/Bam Manipulation


Usage

bam2fq.py -i test_PairedEnd_StrandSpecific_hg19.sam -o bam2fq_out1


Manual

--version show program’s version number and exit
-h, --help show this help message and exit
-i INPUT_FILE, --input-file=INPUT_FILE
  Alignment file in BAM or SAM format.
-o OUTPUT_PREFIX, --out-prefix=OUTPUT_PREFIX
  Prefix of output fastq files(s).
-s, --single-end
  Specificy ‘-s’ or ‘–single-end’ for single-end sequencing.
-c, --compress Specificy ‘-c’ or ‘–compress’ to compress output fastq file(s) using ‘gzip’ command.


Share your experience or ask a question