Reference Code backup Executable files
Summarizing mapping statistics of a BAM or SAM file.
bam_stat.py -i Pairend_nonStrandSpecific_36mer_Human_hg19.bam
| --version | show program’s version number and exit |
| -h, --help | show this help message and exit |
| -i INPUT_FILE, --input-file=INPUT_FILE | |
| Alignment file in BAM or SAM format. | |
| -q MAP_QUAL, --mapq=MAP_QUAL | |
| Minimum mapping quality to determine uniquely mapped read. | |