sff-dump [options] <accession>
General: | ||||
-h | | | --help | Displays ALL options, general usage, and version information. | |
-V | | | --version | Display the version of the program. | |
Data formatting: | ||||
-N | | | --minSpotId |
Minimum spot id. | |
-X | | | --maxSpotId |
Maximum spot id. | |
-G | | | --spot-group | Split into files by spot group ("read group"). | |
--spot-groups <[list]> | Filter by spot group (read group): name[,...]. | |||
Filtering: | ||||
-R | | | --read-filter <[filter]> | Split into files by value. Values:pass|reject|criteria|redacted. | |
Workflow and piping: | ||||
-O | | | --outdir |
Output directory, default is working directory ('.'). | |
-Z | | | --stdout | Output to stdout, all split data become joined into single stream. Note that this is the BINARY output, does not stream sff.txt. Useful for piping to another program. | |
-T | | | --group-in-dirs | Split into subdirectories instead of files. | |
-K | | | --keep-empty-files | Do not delete empty files. |