Reference Code backup Executable files
Generate statistics about SRA data (quality distribution, etc.)
sra-stat [options] <path/file> [<path/file> ...]
| General: | ||||
| -h | | | --help | Displays ALL options, general usage, and version information | |
| -V | | | --version | Display the version of the program | |
| Output formatting: | ||||
| -x | | | --xml | output as XML, default is text | |
| -s | | | --statistics | calculate READ_LEN average and standard deviation | |
| Filtering: | ||||
| -a | | | --alignment |
print alignment info, default is on | |
| -b | | | --start |
starting spot id, default is 1 | |
| -e | | | --stop |
ending spot id, default is max | |
| -q | | | --quick | quick mode: get statistics from metadata; do not scan the table | |
| --option-file |
Read more options and parameters from the file. | |||