Reference Code backup Executable files
Create a bed file (just bed3) that contains the regions common to all inputs.
bedCommonRegions file1 file2 file3 ... fileN
This tool is part of UCSC Genome Browser's utilities.
Create a bed file (just bed3) that contains the regions common to all inputs. Regions are common only if exactly the same chromosome, starts, and end. Overlap is not enough. Each region must be in each input at most once. Output is stdout.
Related tools: bedtools intersect