bedGeneParts

Reference Code backup Executable files

Given a bed, spit out promoter, first exon, or all introns.

Category

Generic

Usage

bedGeneParts part in.bed out.bed

Manual

This tool is part of UCSC Genome Browser's utilities.

Where part is either 'exons' or 'firstExon' or 'introns' or 'promoter' or 'firstCodingSplice'
or 'secondCodingSplice'
options:
-proStart=NN - start of promoter relative to txStart, default -100
-proEnd=NN - end of promoter relative to txStart, default 50

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