Category
Generic
Usage
bedIntersect a.bed b.bed output.bed
Manual
This tool is part of UCSC Genome Browser's utilities.
options:
-aHitAny output all of a if any of it is hit by b
-minCoverage=0.N min coverage of b to output match (or if -aHitAny, of a).
Not applied to 0-length items. Default 0.000010
-bScoreoutput score from b.bed (must be at least 5 field bed)
-tabchop input at tabs not spaces
-allowStartEqualEnd Don't discard 0-length items of a or b
(e.g. point insertions)
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