Category
Generic
Usage
bedPileUps in.bed
Manual
This tool is part of UCSC Genome Browser's utilities.
Where in.bed is in one of the ascii bed formats.
The in.bed file must be sorted by chromosome,start,
to sort a bed file, use the unix sort command:
sort -k1,1 -k2,2n unsorted.bed > sorted.bed
Options:
-name - include BED name field 4 when evaluating uniqueness
-tab - use tabs to parse fields
-verbose=2 - show the location and size of each pileUp
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