Category
Generic
Usage
bedToPsl chromSizes bedFile pslFile
Manual
This tool is part of UCSC Genome Browser's utilities.
Convert a BED file to a PSL file. This the result is an alignment.
It is intended to allow processing by tools that operate on PSL.
If the BED has at least 12 columns, then a PSL with blocks is created.
Otherwise single-exon PSLs are created.
Options:
-keepQuery - instead of creating a fake query, create PSL with identical query and
target specs. Useful if bed features are to be lifted with pslMap and one
wants to keep the source location in the lift result.
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