bedWeedOverlapping

Reference Code backup Executable files

Filter out beds that overlap a 'weed.bed' file.

Category

Generic

Usage

bedWeedOverlapping weeds.bed input.bed output.bed

Manual

This tool is part of UCSC Genome Browser's utilities.

options:
-maxOverlap=0.N - maximum overlapping ratio, default 0 (any overlap)
-invert - keep the overlapping and get rid of everything else

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