Category
Generic
Usage
bigBedSummary file.bb chrom start end dataPoints
Manual
This tool is part of UCSC Genome Browser's utilities.
Get summary data from bigBed for indicated region, broken into
dataPoints equal parts. (Use dataPoints=1 for simple summary.)
options:
-type=X where X is one of:
coverage - % of region that is covered (default)
mean - average depth of covered regions
min - minimum depth of covered regions
max - maximum depth of covered regions
-fields - print out information on fields in file.
If fields option is used, the chrom, start, end, dataPoints
parameters may be omitted
-udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs
Share your experience or ask a question