chainAntiRepeat

Reference Code backup Executable files

Get rid of chains that are primarily the results of repeats and degenerate DNA

Category

Generic

Usage

chainAntiRepeat tNibDir qNibDir inChain outChain

Manual

This tool is part of UCSC Genome Browser's utilities.

options:
-minScore=N - minimum score (after repeat stuff) to pass
-noCheckScore=N - score that will pass without checks (speed tweak)

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