Category
Generic
Usage
chainToAxt in.chain tNibDirOr2bit qNibDirOr2bit out.axt
Manual
This tool is part of UCSC Genome Browser's utilities.
options:
-maxGap=maximum gap sized allowed without breaking, default 100
-maxChain=maximum chain size allowed without breaking, default 1073741823
-minScore=minimum score of chain
-minId=minimum percentage ID within blocks
-bed Output bed instead of axt
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