checkCoverageGaps

Reference Code backup Executable files

Check for biggest gap in coverage for a list of tracks.For most tracks coverage of 10,000,000 or more will indicate that there wasa mistake in generating the track.

Category

Generic

Usage

checkCoverageGaps database track1 ... trackN

Manual

This tool is part of UCSC Genome Browser's utilities.

Note: for bigWig and bigBeds, the biggest gap is rounded to the nearest 10,000 or so
options:
-allParts If set then include _hap and _random and other wierd chroms
-female If set then don't check chrY
-noComma - Don't put commas in biggest gap output

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