faCmp [options] a.fa b.fa
This tool is part of UCSC Genome Browser's utilities.
-softMask - use the soft masking information during the compare
Differences will be noted if the masking is different.
-sortName - sort input files by name before comparing
-peptide - read as peptide sequences
no masking information is used during compare. It is as if both
sequences were not masked.
- 0 if files are the same
- 1 if files differ
- 255 on an error
Share your experience or ask a question