Category
Sequence Analysis
Usage
faTrans [options] in.fa out.fa
Manual
This tool is part of UCSC Genome Browser's utilities.
Required arguments
- in.fa: Input DNA FASTA file to be translated.
- out.fa: Output peptide FASTA file to store the translated sequences.
Options
- -stop: Stop at the first stop codon. If not used, "Z" is put for stop codons.
- -offset N: Start translation at a particular offset.
- -cdsUpper: CDS (coding sequence) is in upper case.
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