genePredSingleCover [options] inGenePred outGenePred


This tool is part of UCSC Genome Browser's utilities.

Create a genePred file that have single CDS coverage of the genome. UTR is allowed to overlap. The default is to keep the gene with the largest numberr of CDS bases.

Required arguments

  • inGenePred
  • outGenePred


  • -scores=file: read scores used in selecting genes from this file. It consists of tab seperated lines of
    name chrom txStart score
    where score is a real or integer number. Higher scoring genes will be choosen over lower scoring ones. Equaly scoring genes are choosen by number of CDS bases. If this option is supplied, all genes must be in the file.


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