gff3ToPsl mapFile inGff3 out.psl
This tool is part of UCSC Genome Browser's utilities.
mapFile mapping of locus names to chroms and sizes.
File formatted: locusName chromeName chromSize
inGff3 GFF3 formatted file with Gap attribute in match records
out.psl PSL formatted output
The first step is to parse GFF3 file, up to 50 errors are reported before
aborting. If the GFF3 files is successfully parse, it is converted to PSL
Input file must conform to the GFF3 specification:
Share your experience or ask a question