Category
Multiple sequence alignments / Conservation
Usage
mafAddIRows mafIn twoBitFile mafOut
Manual
This tool is part of UCSC Genome Browser's utilities.
WARNING: requires a maf with only a single target sequence
options:
-nBeds=listOfBedFiles
reads in list of bed files, one per species, with N locations
-addN
adds rows of N's into maf blocks (rather than just annotating them)
-addDash
adds rows of -'s into maf blocks (rather than just annotating them)
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