Category
Generic
Usage
netChainSubset in.net in.chain out.chain
Manual
This tool is part of UCSC Genome Browser's utilities.
options:
-gapOut=gap.tab - Output gap sizes to file
-type=XXX - Restrict output to particular type in net file
-splitOnInsert - Split chain when get an insertion of another chain
-wholeChains - Write entire chain references by net, don't split
when a high-level net is encoundered. This is useful when nets
have been filtered.
-skipMissing - skip chains that are not found instead of generating
an error. Useful if chains have been filtered.
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