Category
Generic
Usage
netToAxt in.net in.chain target.2bit query.2bit out.axt
Manual
This tool is part of UCSC Genome Browser's utilities.
note:
directories full of .nib files (an older format)
may also be used in place of target.2bit and query.2bit.
options:
-qChain - net is with respect to the q side of chains.
-maxGap=N - maximum size of gap before breaking. Default 100
-gapOut=gap.tab - Output gap sizes to file
-noSplit - Don't split chain when there is an insertion of another chain
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