Category
Generic
Usage
nibFrag [options] file.nib start end strand out.fa
Manual
This tool is part of UCSC Genome Browser's utilities.
where strand is + (plus) or m (minus)
options:
-masked - use lower case characters for bases meant to be masked out
-hardMasked - use upper case for not masked-out and 'N' characters for masked-out bases
-upper - use upper case characters for all bases
-name=name Use given name after '>' in output sequence
-dbHeader=db Add full database info to the header, with or without -name option
-tbaHeader=db Format header for compatibility with tba, takes database name as argument
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