Category

Generic


Usage

pslRecalcMatch in.psl targetSeq querySeq out.psl


Manual

This tool is part of UCSC Genome Browser's utilities.

where targetSeq is either a nib directory or a two bit file
and querySeq is a fasta file, nib file, two bit file, or list
of such files. The psl's should be simple non-translated ones.
This will work faster if the in.psl is sorted on target.
options:
-ignoreQUniq - ignore everything after the last `-' in the qName field, that
is sometimes used to generate a unique identifier


Share your experience or ask a question