Category
Generic
Usage
pslSort dirs[1|2] outFile tempDir inDir(s)
Manual
This tool is part of UCSC Genome Browser's utilities.
This will sort all of the .psl files in the directories
inDirs in two stages - first into temporary files in tempDir
and second into outFile. The device on tempDir needs to have
enough space (typically 15-20 gigabytes if processing whole genome)
pslSort g2g[1|2] outFile tempDir inDir(s)
This will sort a genome to genome alignment, reflecting the
alignments across the diagonal.
Adding 1 or 2 after the dirs or g2g will limit the program to
only the first or second pass repectively of the sort
Options:
-nohead - do not write psl header:
-verbose=N Set verbosity level, higher for more output. Default 1
Share your experience or ask a question