twoBitInfo input.2bit output.tab
This tool is part of UCSC Genome Browser's utilities.
- -nBed: instead of seq sizes, output BED records that define areas with N's in sequence
- -noNs: outputs the length of each sequence, but does not count Ns
- -udcDir=/dir/to/cache: place to put cache for remote bigBed/bigWigs (This option is deprecated)
Output file has two columns:
In the 2bit file is in the form path:seq or path:seq:start-end: or path:seq1,seq2,seqN... the information is returned only on the requested sequence (start-end is ignored).
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