vdb-dump [options] <accession>
| General: | ||||
| -h | | | --help | Displays ALL options, general usage, and version information. | |
| -V | | | --version | Display the version of the program. | |
| Data formatting: | ||||
| -I | | | --row_id_on | Print row id. | |
| -N | | | --colname_off | Do not print column-names. | |
| -X | | | --in_hex | Print numbers in hex. | |
| -E | | | --table_enum | Enumerates tables. | |
| -T | | | --table |
Dumps only those tables included in a comma-separated list | |
| -o | | | --column_enum_short | Lists available columns in short form (recommended) | |
| -O | | | --column_enum | Lists columns in extended form | |
| --phys | Lists physical columns | |||
| -C | | | --columns |
Dumps only those columns included in a comma-separated list | |
| -x | | | --exclude | Exclude the specified columns | |
| -R | | | --rows |
Dumps the specified rows | |
| -M | | | --max_length |
limits line length | |
| -f | | | --format |
dump format (csv,xml,json,piped,tab,fastq,fasta) | |
| Workflow and piping: | ||||
| --output-file | write output to this file | |||
| --gzip | compress output using gzip | |||
| --bzip2 | compress output using bzip2 | |||
| --output-buffer-size | size of output-buffer, 0...none | |||
| --disable-multithreading | disable multithreading | |||
| --option-file |
Read more options and parameters from the file. | |||