selectPositions.py can filter an output REDItool table according to different criteria.
selectPositions.py -i unselected_positions.txt -o selected_positions.txt
Options:
-i Table file from REDItools
-d Base distribution column for DNA-Seq (-1: no DNA-Seq) [-1]
-c Coverage RNA-Seq [5]
-C Coverage DNA-Seq [5]
-v Bases supporting RNA-Seq variation [1]
-V Bases supporting DNA-Seq variation [0]
-s Substitutions to select in RNA-Seq (separated by comma AG,CT) [all]
-f Frequency of variation in RNA-Seq [0.1]
-F Frequency of non-variation in DNA-Seq [0.95]
-e Exclude multiple substitutions in RNA-Seq
-r Exclude invariant sites in RNA-Seq
-R Exclude variant sites in DNA-Seq #
-u Use only positions supported by DNA-Seq
-o Save selected positions on outTable_533864766
-h Print this help