| bigWigMerge |
bigWigMerge in1.bw in2.bw .. inN.bw out.bedGraph |
Merge together multiple bigWigs into a single output bedGraph. |
| bigBedToBed |
bigBedToBed input.bb output.bed |
Convert from bigBed to ascii bed format. |
| gff3ToGenePred |
gff3ToGenePred inGff3 outGp |
Convert a GFF3 file to a genePred file |
| bedGraphToBigWig |
bedGraphToBigWig in.bedGraph chrom.sizes out.bw |
Convert a bedGraph file to bigWig format. |
| bigWigToBedGraph |
bigWigToBedGraph in.bigWig out.bedGraph |
Convert from bigWig to bedGraph format. |
| twoBitToFa |
twoBitToFa input.2bit output.fa |
Convert all or part of .2bit file to fasta |
| genePredToBed |
genePredToBed in.genePred out.bed |
Convert from genePred to bed format |
| lavToAxt |
lavToAxt in.lav tNibDir qNibDir out.axt |
Convert blastz lav file to an axt file (which includes sequence) |
| wiggletools |
wiggletools sum [bigwig files...] |
Merge BigWig files |