| mktime |
valid dates: 1970-01-01 00:00:00 to 2038-01-19 03:14:07 |
Convert date string to unix timestamp |
| positionalTblCheck |
positionalTblCheck db table |
positionalTblCheck - check that positional tables are sorted |
| bedCommonRegions |
bedCommonRegions file1 file2 file3 ... fileN |
Create a bed file (just bed3) that contains the regions common to all inputs.Regions are common only if exactly the same chromosome, starts, and end. Overlap is not enough. Each region must be in each input at most once. Output is stdout. |
| autoSql |
autoSql specFile outRoot {optional: -dbLink -withNull -json} |
Create SQL and C code for permanently storinga structure in database and loading it back into memorybased on a specification file |
| findMotif |
findMotif [options] -motif=<acgt...> sequence |
Find specified motif in sequence |
| pslxToFa |
pslxToFa in.psl out.fa |
Convert pslx (with sequence) to fasta file |
| toLower |
toLower inFile outFile |
Convert upper case to lower case in file. Leave other chars alone |
| aveCols |
aveCols file |
Average together columns |
| raToLines |
raToLines in.ra out.txt |
Output .ra file stanzas as single lines, with pipe-separated fields. |
| randomLines |
randomLines inFile count outFile |
Pick out random lines from file |
| bigWigCat |
bigWigCat out.bw in1.bw in2.bw ... |
Merge non-overlapping bigWig files |
| pigz |
pigz [options] [files ...] |
Compress files in parallel |
| gzip |
gzip [OPTION]... [FILE]... |
Compress FILEs (by default, compress FILES in-place). |